Software Packages in "dapper", Subsection science

achilles (2-4.2ubuntu2) [universe]

An artificial life and evolution simulator

avce00 (1.3.0-2) [universe]

Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format.

avida-base (2.0b7-4ubuntu1) [universe]

Auto-adaptive genetic system for Artificial Life research

avida-qt-viewer (2.0b7-4ubuntu1) [universe]

qt viewer for avida

avida-viewer (2.0b7-4ubuntu1) [universe]

ncurses viewer for avida

biococoa.app (1.6.0-2build1) [universe]

Sequence file format conversion for GNUstep

biomode (1.002-7) [universe]

[Biology] An Emacs mode to edit genetic data

bioperl (1.4-1) [universe]

Perl tools for computational molecular biology

blast2 (1:2.2.13.20051206-1ubuntu1) [universe]

Basic Local Alignment Search Tool

blinken (4:3.5.2-0ubuntu9) [universe]

the well-known game Simon Says for KDE

boxshade (3.1.1-1) [universe]

[Biology] Pretty-printing of multiple sequence alignments

celestia-common (1.3.2-3.1ubuntu3) [universe]

Datafiles for Celestia, a real-time visual space simulation

celestia-glut (1.3.2-3.1ubuntu3) [universe]

A real-time visual space simulation (GLUT frontend)

cernlib (2005.05.09.dfsg-4ubuntu1) [universe]

almost complete set of Debian Cernlib packages

cernlib-core (2005.05.09.dfsg-4ubuntu1) [universe]

Cernlib main libraries and programs

cernlib-core-dev (2005.05.09.dfsg-4ubuntu1) [universe]

Cernlib development headers, tools, and static libraries

cernlib-extras (2005.05.09.dfsg-4ubuntu1) [universe]

miscellaneous Cernlib programs unlikely to be used by many

cernlib-montecarlo (2005.05.09.dfsg-4ubuntu1) [universe]

Cernlib Monte Carlo libraries

chemtool (1.6.7-2ubuntu2) [universe]

Chemical structures drawing program

clustalw (1.83-1) [multiverse]

[Biology] Global multiple nucleotide or peptide sequence alignment

clustalw-mpi (0.13-3) [multiverse]

[Biology] MPI-distributed global sequence alignment with ClustalW

clustalx (1.83-1) [multiverse]

[Biology] GUI for clustalw

ctsim (4.4.2-1ubuntu3) [universe]

Computed tomography simulator

ctsim

paquet virtuel fourni par ctsim-pentium4, ctsim-athlon

ctsim-athlon (4.4.2-1ubuntu3) [universe]

Computed tomograpy simulator (Athlon optimized)

ctsim-help (4.4.2-1ubuntu3) [universe]

Online help file for CTSim

ctsim-pentium4 (4.4.2-1ubuntu3) [universe]

Computed tomograpy simulator (Pentium 4 optimized)

dcmtk (3.5.4-1) [universe]

The OFFIS DICOM toolkit command line utilities

drawmap (2.5-1.1) [universe]

draws customized maps, using raw USGS data files

dx (1:4.3.2-7ubuntu1) [universe]

OpenDX (IBM Visualization Data Explorer) - main package

dxsamples (4.2.0-1) [universe]

Sample programs for the OpenDX Data Explorer

e00compr (1.0.0-2) [universe]

a program to read/write Arc/Info compressed E00 files

easychem (0.6-0ubuntu2) [universe]

Draw high-quality molecules and chemical 2D formulas

ent (1.0-5) [universe]

pseudorandom number sequence test program

fastdnaml (1.2.2-5) [universe]

[Biology] A tool for construction of phylogenetic trees of DNA sequences

fastlink (4.1P-fix91-1) [universe]

[Biology] A faster version of pedigree programs of Linkage

fastlink-doc (4.1P-fix91-1) [universe]

[Biology] Some papers about fastlink

felt (3.06-9) [universe]

Package for introductory level finite element analysis

fityk (0.5.1-2ubuntu1) [universe]

general-purpose nonlinear curve fitting and data analysis

fv (3.0-14ubuntu1) [universe]

a tool for viewing and editing FITS format files

g3data (1:1.5.0-2ubuntu1) [universe]

extract data from scanned graphs

garlic (1.4-1ubuntu1) [universe]

A visualization program for biomolecules

gausssum (1.0.3-2ubuntu1) [universe]

Parses and displays Gaussian, GAMESS, and HyperChem output

gcx (0.9.8-2ubuntu1) [universe]

astronomical image processing and photometry gtk+ application

gdal-bin (1.2.6-1.3build1) [universe]

Geospatial Data Abstraction Library - Utility programs

gdis (0.86-2ubuntu2) [universe]

molecular display

gdpc (2.2.4-1ubuntu1) [universe]

visualiser of molecular dynamic simulations

gdpc-examples (2.2.4-1ubuntu1) [universe]

example files for the gdpc program

geant321 (2005.05.09.dfsg-4ubuntu1) [universe]

[Physics] Particle detector description and simulation tool

geant321-data (2005.05.09.dfsg-4ubuntu1) [universe]

[Physics] Data for Geant 3.21 detector simulator

genesis (2.2.1-5ubuntu1) [universe]

general-purpose neural simulator

gff2aplot (2.0-3) [universe]

pair-wise alignment-plots for genomic sequences in PostScript

gff2ps (0.98d-1) [universe]

produces PostScript graphical output from GFF-files

gmt (4.0-2build1) [universe]

Generic Mapping Tools

gmt-doc-pdf (4.0-2build1) [universe]

PDF docs for the Generic Mapping Tools

gmt-tutorial (3.4-1) [universe]

Data files needed to reproduce the tutorial examples of GMT

gmt-tutorial-pdf (4.0-2build1) [universe]

Tutorial for the Generic Mapping Tools (PDF)

gperiodic (2.0.7-5ubuntu1) [universe]

periodic table application

gpib-modules-source (3.2.06-3) [universe]

kernel modules for various GPIB boards

gpx2shp (0.69-1) [universe]

convert GPS or GPX file to ESRI Shape file

grass (6.0.1-1ubuntu2) [universe]

Geographic Resources Analysis Support System

grass-doc (6.0.1-1ubuntu2) [universe]

Geographic Resources Analysis Support System documentation

gri (2.12.9-3) [universe]

a language for scientific illustration.

gri-el (2.12.9-3) [universe]

Emacs major-mode for gri, a language for scientific graphics.

gromacs (3.3-2) [universe]

Molecular dynamics simulator, with building and analysis tools

gromacs-lam (3.3-2) [universe]

Molecular dynamics sim, binaries for LAM-MPI parallelization

gromacs-mpich (3.3-2) [universe]

Molecular dynamics sim, binaries for MPICH parallelization

h5utils (1.10-3) [universe]

HDF5 files visualization tools

hdf5-tools (1.6.4-4) [universe]

Hierarchical Data Format 5 (HDF5) - Runtime tools

hmmer (2.1.4) [universe]

models protein or nucleic acid sequences.

hodie (1.4-3) [universe]

prints the date in latin

ifrit (2.9.4-1ubuntu1) [universe]

a powerful tool for visualizing 3-dimensional data sets

imview (1.1.8-4ubuntu1) [universe]

Image viewing and analysis application

kalzium (4:3.5.2-0ubuntu9)

chemistry teaching tool for KDE

kstars (4:3.5.2-0ubuntu9)

desktop planetarium for KDE

kstars-data (4:3.5.2-0ubuntu9)

data files for KStars desktop planetarium

kxterm (2005.05.09.dfsg-4ubuntu1) [universe]

Cernlib's KUIP terminal emulator

libbio-ruby (0.6.4-1) [universe]

bioruby tools for computational molecular biology

libbio-ruby1.8 (0.6.4-1) [universe]

bioruby tools for computational molecular biology

libghemical-data (1.91-1) [universe]

Molecular Modelling Library (Data Files)

libgpib-bin (3.2.06-3) [universe]

libgpib support applications and configuration

libqgis0 (0.7.4-2ubuntu1) [universe]

QGIS Geographic Information System - shared library

libqgis0-dev (0.7.4-2ubuntu1) [universe]

QGIS Geographic Information System - development files

loki (2.4.7.4-1) [universe]

[Biology] MCMC linkage analysis on general pedigrees

loki-doc (2.4.7.4-1) [universe]

[Biology] Postscript manual for loki

mayavi (1.4-1ubuntu1) [universe]

A scientific data visualization system

minc-tools (1.4-1build1) [universe]

MNI medical image format tools

mipe (1.1-1) [universe]

[Biology] Tools to store PCR-derived data

mn-fit (5.13-1) [universe]

interactive analysis package for fitting data and histograms

mn-fit-common (5.13-1) [universe]

common files for Mn_Fit

molphy (2.3b3-2) [multiverse]

[Biology] Program Package for MOLecular PHYlogenetics

montecarlo-base (2005.05.09.dfsg-4ubuntu1) [universe]

[Physics] Common files for Cernlib Monte Carlo libraries

mozilla-biofox (1.1.2-1) [universe]

extension of bioinformatics tools to Mozilla and Firefox browsers

mpb (1.4.2-8) [universe]

MIT Photonic-Bands

mpb-mpi (1.4.2-8) [universe]

MIT Photonic-Bands, parallel (mpich) version

mpqc (2.3.0-1) [universe]

The Massively Parallel Quantum Chemistry Program

mpqc-support (2.3.0-1) [universe]

Support programs and tools for MPQC

muscle (3.52-2build1) [universe]

[Biology] multiple alignment program of protein sequences

muscle-doc (3.52-2build1) [universe]

[Biology] documentation to sequence alignment program

ncbi-epcr (1.2.0-3build1) [universe]

[Biology] Tool to test a DNA sequence for the presence of sequence tagged sites

ncbi-epcr-data (1.2.0-3build1) [universe]

[Biology] NCBI public STS data

ncbi-tools-bin (6.1.20051206-1ubuntu1) [universe]

NCBI libraries for biology applications (text-based utilities)

ncbi-tools-x11 (6.1.20051206-1ubuntu1) [universe]

NCBI libraries for biology applications (X-based utilities)

netcdf-bin (3.6.0+3.6.1-beta3-0ubuntu1) [universe]

Programs for reading and writing NetCDF files

njplot (0.20051109-1ubuntu1) [universe]

[Biology] A tree drawing program

openbabel (1.100.2-4) [universe]

Convert and manipulate chemical data files

openuniverse (1.0beta3.1-2ubuntu2) [universe]

3D Universe Simulator

openuniverse-common (1.0beta3.1-2ubuntu2) [universe]

3D Universe Simulator data files

paje.app (1.3.2-4ubuntu2) [universe]

generic visualization tool (Gantt chart and more)

paw (2005.05.09.dfsg-4ubuntu1) [universe]

Physics Analysis Workstation - a graphical analysis program

paw++ (2005.05.09.dfsg-4ubuntu1) [universe]

Physics Analysis Workstation (Lesstif-enhanced version)

paw++-static (2005.05.09.dfsg-4ubuntu1) [universe]

Dummy package for smooth upgrades of Paw++

paw-common (2005.05.09.dfsg-4ubuntu1) [universe]

Physics Analysis Workstation (common files)

paw-demos (2005.05.09.dfsg-4ubuntu1) [universe]

Physics Analysis Workstation examples and tests

paw-static (2005.05.09.dfsg-4ubuntu1) [universe]

Dummy package for smooth upgrades of PAW

perlprimer (1.1.8-1ubuntu1) [universe]

[Biology] graphical design of primers for PCR

perlprimer-doc (1.1.8-1ubuntu1) [universe]

[Biology] tutorial to perlprimer

php4-gpib (3.2.06-3) [universe]

libgpib php bindings

phylip-doc (1:3.6.1-2) [multiverse]

[Biology] A package of programs for inferring phylogenies

planets (0.1.12-6ubuntu1) [universe]

Gravitation simulation of planetary bodies

polyxmass (0.8.8) [universe]

Mass spectrometry software framework

polyxmass-bin (0.8.9-1ubuntu1) [universe]

Mass spectrometry framework - GUI program

polyxmass-bin-common (0.8.9-1ubuntu1) [universe]

Mass spectrometry framework - GUI program arch-indep data

polyxmass-common (0.8.7-1) [universe]

Mass spectrometry framework - essential polymer chemistry data

polyxmass-data (0.8.6-1) [universe]

Mass spectrometry framework - supplementary chemical data

praat (4.4.19-1ubuntu1) [universe]

program for speech analysis and synthesis

proj (4.4.9d-2) [universe]

Cartographic projection filter and library

pymol (0.98-1ubuntu2) [universe]

An OpenGL Molecular Graphics System written in Python

qgis (0.7.4-2ubuntu1) [universe]

Geographic Information System (GIS)

qgis-plugin-grass (0.7.4-2ubuntu1) [universe]

Plugin for accessing GRASS data from QGIS

qmc (0.94-3build1) [universe]

Quine McClusky Simplification Tool

qtdmm (0.8.6-1ubuntu1) [universe]

GUI for digital multimeter

rasmol (2.7.2.1.1-3ubuntu3) [universe]

Visualize biological macromolecules

rasmol-doc (2.7.2.1.1-3ubuntu3) [universe]

Documentation for rasmol

readseq (1-6) [universe]

[Biology] Conversion between sequence formats

saods9 (4.0b7-1.1ubuntu1) [universe]

image display tool for astronomy

seaview (20021127-4.1) [multiverse]

[Biology] A multiple sequence alignment editor

seesat5 (0.90.10-1ubuntu1) [universe]

a satellite location program

sextractor (2.4.3-1) [universe]

source extractor for astronomical images

sim4 (0.0.20030921-1) [universe]

tool for aligning cDNA and genomic DNA

spass (2.1-3) [universe]

An automated theorem prover for first-order logic with equality

ssystem (1.6-15ubuntu2) [universe]

3D solar system simulator

stardata-common (0.4) [universe]

Common framework to manage astronomy packages

starplot (0.95.3-2ubuntu1) [universe]

3-dimensional perspective star map viewer

stellarium (0.7.1-1ubuntu3) [universe]

real-time photo-realistic sky generator

stellarium-data (0.7.1-1ubuntu3) [universe]

datafiles for Stellarium, a real-time photo-realistic sky generator

survex (1.0.39ubuntu1) [universe]

Cave surveying and mapping software

survex-aven (1.0.39ubuntu1) [universe]

sophisticated cave survey viewer for Survex

survex-svxedit (1.0.39ubuntu1) [universe]

survey data editor for Survex

t-coffee (2.50-1) [universe]

[Biology] Multiple Sequence Alignment

tessa (0.3.1-3ubuntu1) [universe]

simulation of 3D optical systems with the FDTD method

tessa-mpi (0.3.1-3ubuntu1) [universe]

simulation of 3D optical systems using FDTD on LAM-MPI clusters

textopo (1.3-2) [universe]

[Biology] LaTeX presentation of topology of transmembrane proteins

therion (0.3.9-2) [universe]

Cave surveying - 2D and 3D drawing software

tigr-glimmer (2.13-1) [universe]

[Biology] Gene detection in archea and bacteria

tochnog (20010124-2.1build1) [universe]

A free implicit/explicit finite element analysis program

transcalc (0.13-1.1ubuntu1) [universe]

microwave and RF transmission line calculator

tree-puzzle (5.2-1) [universe]

[Biology] Reconstruction of phylogenetic trees by maximum likelihood

units-filter (1.0-3) [universe]

Parser for expressions concerning physical values

viewmol (2.4.1-6ubuntu3) [universe]

A graphical front end for computational chemistry programs.

xbs (0-7.3) [universe]

3-d models and movies of molecules

xdrawchem (1.9.8-3ubuntu1) [universe]

Chemical structures and reactions editor

xmakemol (5.14-1ubuntu2) [universe]

A program for visualizing atomic and molecular systems

xplot (1.19-6) [universe]

a simple x-y column data plotter for X.

xtide (2.8.2-1ubuntu1) [universe]

provides tide and current predictions

xtide-data (20040203-1) [universe]

Harmonics data for xtide

ygraph (0.15-2) [universe]

Visualize one-dimensional scientific data